Nenad Amodaj

nenad@amodaj.com

 

Since the summer of 2005 Nenad Amodaj is engaged in the Open Source software project for microscopy - µManager:  micro-manager.org, at the University of California San Francisco, Vale Lab, leading the software development. The project is sponsored by the Sandler Foundation. µManager is a new cross-platform solution for automated imaging, providing the flexible and open foundation for integrating wide range of cameras, microscopes, stages and other devices.

 

Previously Nenad was the system architect and manager of the Cellular Imaging team, leading the development of the ImageXpress 5000 software at Axon Instruments and later at Molecular Devices. ImageXpress 5000 software was a result of a five year effort to develop a comprehensive, enterprise level solution for acquisition and automated analysis for cell-based drug discovery. As a software architect Nenad directed a team of engineers to build bioinformatics high-content database, image analysis engine, and automation software infrastructure. He also actively contributed to the development of software for advanced visualization, machine learning and cell-based assays. Before taking over imaging software at Axon Instruments, Nenad developed a hardware-based transient cancellation algorithm for the new generation of patch clamp amplifiers (MultiClamp product family), as well as the algorithm for adaptive interference filtering for electrophysiology recordings (Clampfit). Before joining Axon he developed the S-Probe software for real time movement frequency analysis in microscopy imaging of tissues at the Bookman Lab, University of Miami.

 

Prior to moving to the United States in 1998, Nenad co-founded TehnoCAD, a software company for computer aided design. While at TehnoCAD, he directed software development of various commercial applications in structural engineering, numerical methods, image analysis and medical imaging databases.

 

Nenad started his career as a research engineer at the University of Belgrade (former Yugoslavia) where he authored several software projects in computer vision, including remote sensing, automatic analysis of intravascular ultrasound images (IVUS) and digital angiography. He also taught a course on computer analysis of medical ultrasound images at the annual School of Ultrasound conferences. Nenad holds BS and MS degrees in Electrical Engineering from the University of Belgrade.

 

Current interests include image analysis, automated imaging, cellular-informatics and pattern recognition with applications in high-content screening and drug discovery. Nenad is a member of the IEEE since 1988.