Critical: if you updated and Fiji does not work anymore, you need to follow these instructions.
Please note! The authoritative site for Fiji is http://pacific.mpi-cbg.de, so if you downloaded Fiji from some mirrors such as Softpedia and experience problems, please re-download from here and verify that the problem still exists.
You can download the current version of Fiji ("Heidelberg") for
- Linux (64-bit)
- Windows (64-bit)
Note: There is only limited support for PowerPC (G4/G5) Macs, see MacOSX tips for a special download link.
- All platforms (includes all JREs)
- All platforms (does not include JREs)
- University of California, San Francisco, thanks to Nico Stuurman!
- Fiji on GoogleCode (only files smaller than 100MB due to upload restrictions)
- Fiji on SourceForge
Java WebStart is a means to deploy full Java applications via web, without the need to install anything.
Fiji provides two WebStart versions:
- stable, which has the same versions of the plugins as the Fiji Updater would provide, and
- current, which follows the cutting-edge of Fiji's source code repository.
Both are updated every night (to be precise, some time after 04:15 central European time).
Packages for Debian / Ubuntu
These packages have not been extensively tested, so feedback to mark-fiji at longair.net would be very much appreciated.
There are Debian packages of Fiji. Add the following lines to /etc/apt/sources.list:
deb http://valelab.ucsf.edu/~schindelin/downloads/apt/ ./ deb-src http://valelab.ucsf.edu/~schindelin/downloads/apt/ ./
Then do the following:
sudo apt-get update sudo apt-get install fiji
You should then be able to just run "fiji" from the command line.
Alternatively, if you want to install the .deb files directly with dpkg, you can download the packages directly here:
- These packages should work for you, but fail to meet policy for being official Debian and Ubuntu packages in many ways - we are working towards this, however, so if you use the apt repository above and update regularly, you should see the packages improve and reduce in size over time.
- These packages aren't signed at the moment, so you will get a warning about the packages not being authenticated.